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Health Sciences Library
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Dentistry



Recap of Dental Student Summer Research class on 7/8/14

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As promised, here is a recap of the information we went over today in Dr. Edgerton’s class.

PubMed

  • provided by the National Library of Medicine, PubMed contains thousands of citations from medical journals in the fields of dentistry, medicine, nursing, and pre-clinical sciences.
  • it is possible to search using natural language or MeSH (medical subject headings); to use MeSH to search, switch from PubMed to MeSH in the dropdown menu from the main search box.
  • MeSH is the common language of PubMed; when looking at an article, always check what MeSH terms have been assigned to it for ideas about your own search.
  • the advanced search will allow you build complicated searches, and will display all of your searches from the last eight hours.
  • Use the filters on the left side of the page to quickly narrow your search by article type, publication years, age of subjects, and more.  One thing to remember about limits – clear the filters after your search, or they will be applied to every search you do until you take them off.
  • if you create a MY NCBI account, you can set up search alerts, save citations to a favorites list, create custom filters, and review any search you have ever done in PubMed
  • to access the full text of an article, always select the Article Linker button, which will appear in the upper right corner of the site when reviewing the detailed record of an article citation.
  • most importantly, always access PubMed through HSL’s site.  PubMed will know you are affiliated with UB and will connect you to the UB Libraries’ subscriptions, allowing you to get the full text that you need.

Web of Science

  • Web of Science is a huge databases which indexes the sciences, social sciences, and humanities.  It does not use controlled vocabulary like MeSH.
  • Web of Science can be used in two ways to find information: general literature searching, or cited reference searching.  Cited reference searching will allow you to see what article have cited a specific article since publication, as well as allow you to view the references of the specific article as well.  If one article cites another, odds are they are on a very similar topic.
  • High citation counts usually indicate that an article is a landmark article, and contains important information for its field.

Google hacks

  • putting search terms in quotes will filter through results to return items where the words appear together.
  • use the minus symbol to take out results that do not apply to your search.  Example: sand sharks -movie
  • to limit to a site type, use site:.  Example – site:.gov will limit results to only government websites.

Google Scholar and UB Libraries full text

  • go into Google Scholar settings -> library links -> University at Buffalo.  Check the check box next to University at Buffalo, and select save.  Next time you search, you should see a “Find it @UB” link next to each citation, which will search through the UB Libraries’ subscriptions to find you the full text of what you need.

 

If you would like to see the plagiarism presentation that I gave today, you can see it here.  And remember, if you ever have any questions, please feel free to contact me and ask away!

Out of the Office

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I will be out of the office starting June 28, 2014 and will return on Monday, July 7th. If you need immediate assistance, please contact the reference desk by phone (716)829-5683 or by email at askHSL@buffalo.edu. Thanks, and have a great week. See you soon!

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HSL’s service desk change

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Starting July 1, we’re consolidating our circulation and reference service desks at the Health Sciences Library. All inquiries will be handled at one desk in an effort to provide more streamlined service. While the traditional reference desk will no longer be present, we will continue to welcome reference questions and more in-depth research consultations.

All librarian liaisons to the health sciences schools will remain on the South Campus in the Health Sciences Library, and are still available to assist you with your information needs.

As the librarian liaison to the School of Dental Medicine, I’m always happy to meet with you in person or assist you by email, chat, or phone. Please do not hesitate to contact me if you have any questions about the upcoming change!

Bioinformatics Workshops @ HSL

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HSL’s own Dr. Diane Rein will be offering a variety of bioinformatics workshops this summer.  If you would like to attend any (or all!) of the classes, please be sure to register for each class by following the registration links presented after the workshop description.  Please let me know if you have any questions!

 

Introduction to Blast -  The Basic Local Alignment Search Tool (BLAST)  is a combination statistical and mathematical equation created by the National Center for Biotechnology Information (NCBI).  The BLAST suite offers a set of tools for identifying areas of similarity between various kinds of genomic and protein sequences as well as specialized BLAST tools for Polymerase Chain Reaction (PCR), comparing sequences, identifying mutations, sequences binding molecules such as drugs and more.

Instructor: Dr. Diane Rein
Location: TBD – South Campus
Date: Thursday, June 26, 2014
Time: 1:00 PM – 4:00 PM
Register HERE 

 

Advanced BLAST:   This course will be an extension of the Introduction to BLAST building on the skills learned in the Introduction to BLAST.  This course will cover working with nucleotide BLAST, Assigning biological function to your unknown sequence and specialized BLAST functions.

Instructor: Dr. Diane Rein
Location: TBD  - South Campus
Date: Monday, July 7, 2014
Time: 1:00 PM – 4:00 PM
Register HERE

 

UCSC Genome Browser Workshop- The UCSC Genome Browser permits researchers to rapidly browse a large number of vertebrate, invertebrate, microbial and model organism genomes.  Any portion of any genome may be retrieved at any scale, together with dozens of aligned annotation tracks (known genes, predicted genes, ESTs, mRNAs, CpG islands, assembly gaps and overage, chromosomal bands, mouse homologies, and more).  Users can also add their own custom tracks to the browser for educational or research purposes.  In addition, the Browser provides portals to ENCODE data, the Neanderthal sequences, and is home to the popular sequence alignment tool, BLAT.

Instructor: Dr. Diane Rein
Location: TBD – South Campus
Date: Friday, July 25, 2014
Time: 1pm-4pm
Register HERE

 

Pharm GKB - A pharmacogenomics knowledge resource that encompasses clinical information (including dosing guidelines and drug labels), potential clinically actionable gene-drug association, and genotype-phenotype relationships.  PharmGKB collects, curates and disseminates knowledge about the impact of human genetic variation on drug responses.

Instructor: Dr. Diane Rein
Location: TBD   – South Campus
Date: Friday, August 15, 2014
Time 1:00 PM – 3:00 PM
Register HERE

 

Workshops @ HSL this summer

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This summer, HSL will be hosting several workshops.  Have you always wanted to learn how to use EndNote?  Sign up for one of our No Experience EndNote classes, and learn the basics of how to store and organize PDFs as well as how to utilize EndNote to create manuscript bibliographies with the click of a button.  We also offer an Advanced EndNote class, featuring how to utilize EndNote when collaborating with others on a project.  We also have workshops featuring My NCBI to customize searching with PubMed, as well as a workshop for Prezi, an interactive presentation software.  To register for a class, select the title of the class you would like to take and sign up.

If there is a class that you are interested in but either do not see it below or the class is full, feel free to contact me as HSL offers workshops on demand for groups of five or more!

  • Advanced EndNote
    Wednesday, June 18, 2014 • 12:00 p.m. – 1:30 p.m.
    B2C Abbott Hall (HSL), South Campus
  • No Experience Endnote
    Wednesday, July 9, 2014 • 2:00 p.m. – 3:30 p.m.
    B2C Abbott Hall (HSL), South Campus
  • Prezi: Moving Beyond PowerPoint
    Thursday, July 17, 2014 • 1:00 p.m. – 2:00 p.m.
    B2C Abbott Hall (HSL), South Campus
  • Introduction to My NCBI 
    Monday, August 4, 2014 • 12:00 p.m. – 12:30 p.m.
    B2C Abbott Hall (HSL), South Campus
  • No Experience Endnote
    Thursday, August 7, 2014 • 1:00 p.m. – 2:30 p.m.
    B2C Abbott Hall (HSL), South Campus
  • No Experience Endnote
    Wednesday, August 20, 2014 • 10:00 a.m. – 11:30 a.m.
    B2C Abbott Hall (HSL), South Campus
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Top Resources

MEDLINE

The best place to find biomedical literature including extensive indexing of dentistry journals. MEDLINE includes information from the Index to Dental Literature.  More Info
UB ONLY
Partial Full-Text

Web of Science Core Collection

Multidisciplinary database to journal literature in the sciences that indexes several top tier dentistry journals, including the Journal of Dental Research.  More Info
UB ONLY
Partial Full-Text

CINAHL Plus with Full Text

Provides comprehensive coverage of nursing, dental education, dental hygiene and other allied dental health journal literature.  More Info
UB ONLY
Partial Full-Text

ScienceDirect - (Elsevier)

An e-journal collection that contains partial full-text access to scientific, technical and medical literature, including journals in dentistry.  More Info
UB ONLY
Full-Text

Evidence Based Medicine Reviews (EBMR)

Provides full-text article and topic reviews. EBMR is an excellent source for evidence-based dentistry researchers.  More Info
UB ONLY
Full-Text

PubMed

Povides free of charge access to all MEDLINE citations  More Info
PUBLIC

Databases

EMBASE via Elsevier

Covers the effects, use, and administration of all current, potential and experimental drugs, side effects, manufacturers, and trade names of approved and prospective drugs.  More Info
UB ONLY
Partial Full-Text

Lexi-Comp Online (HUBNET)

Contains up-to-date drug information, dosage information, natural product information and drug toxicology information.
UB ONLY
Partial Full-Text

National Guideline Clearinghouse (NGC)

Evidence-based clinical practice guidelines and related documents. Includes links to some full-text documents.  More Info
UB ONLY
Partial Full-Text

Encyclopedias

American Dental Association Directory

The ADA Directory provides basic information on individual dentists in the United States. More Info
PUBLIC

HUBNET Resources - Electronic Books

A compliation of full text medical references and textbooks.
UB ONLY

Merck Manual

An excellent online medical textbook which contains several chapters on dental and oral disorders. More Info
PUBLIC
Full-Text