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University at Buffalo Libraries

Oscar A. Silverman Library

Science and Engineering


Archive for the ‘Databases’ Category

Cold Springs Harbor Protocols

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Thanks to our health science library colleagues, we now have access to the Cold Springs Harbor Protocols (2006+) at http://libweb.lib.buffalo.edu/pdp/index.asp?ID=556.

Cold Spring Harbor Protocols is an interdisciplinary monthly journal of step-by-step research methods in cell, developmental and molecular biology, genetics, bioinformatics, protein science, computational biology, immunology, neuroscience and imaging. All protocols are up-to-date and presented in a consistent, easy-to-follow format.

Protocols is fully searchable by keyword and subject, and has several novel features including subject categories (including but not limited to antibodies, DNA delivery/gene transfer, electrophoresis, High-throughput analysis, imaging/microscopy, kits, laboratory organisms, plant biology, polymerase chain reaction (PCR), RNA interference (RNAi)/siRNA, and stem cells) as well as a full listing of “recipes” for preparing solutions and biological reagents.

 

Celebrating a Milestone in Biology with a New Database

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This announcement comes to you on the “Diamond Celebration” of the 60th Anniversary of one of biology’s greatest accomplishments.  Codebreakers: Makers of Modern Genetics is a new online database offered by the Wellcome Library in London. It provides a historical glimpse into the race to deduce the chemical structure of the DNA molecule. The crux of this resource is the April 25, 1953 landmark paper published by James Watson and Francis Crick in the journal, Nature, where they reported the chemical structure of DNA, a feat that stimulated a biological revolution that is still unfolding.

Codebreakers brings together more than one million photographs, sketches, notes, and essays related to the Watson & Crick investigation of DNA’s chemical structure. Future plans call for adding resources from 20 smaller collections, 650 digitized images and 500,000 additional pages of text. This $5.88 million dollar project is one of the world’s most comprehensive sources for a cross-disciplinary look at one of the greatest scientific discoveries of all time. Additional information is found at: http://wellcomelibrary.org/using-the-library/subject-guides/genetics/makers-of-modern-genetics.

Database Snapshot: Lecture Notes in Computer Science

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Full-text of the popular Springer book series Lecture Notes in Computer Science (LNCS) includes Lecture Notes in Artificial Intelligence (LNAI) and Lecture Notes in Bioinformatics (LNBI). Most volumes are conference proceedings. Major areas covered in this database are computer science, engineering, math, biology, statistics, GIS, information science, informatics, communication science, physics, bioinformatics, multimedia, and medical imaging. The database includes volumes from 1997-present. Some LNCS volumes in print are owned by the UB Libraries. Users can also refer to the LNCS/AI/BI Conference Acronym Index.

Tips for using Lecture Notes in Computer Science

Enter your terms in the search box in the blue bar (not the upper one). In the results list, full-text is noted with “Download PDF”. Refine your search using the left column of refine options. References for articles and related content are given on the item page.

UB Student Wins 1st Week’s Prize in Knovel University Challenge

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Winner Koushik Ponnuru

UB students turned in a record number of submissions the first week of the Knovel University Challenge, with our school becoming the first in Challenge history to have over 100 students participate in under 24 hours.

And it was a UB student, Koushik Ponnuru in the Chemical & Biological Engineering Department, who took the first week’s prize, a Western Digital HD TV Live Streaming Media Player.

Check out the leader board to see where UB places in the rankings at: http://www.knoveluniversitychallenge.com/leaderboard.php as well as the winners’ page at: http://www.knoveluniversitychallenge.com/winners.php

Be sure to play again this week and become eligible for this week’s prizes as you learn how to use the Knovel e-book database to answer your technical questions.

In Week 2, the questions in the Knovel University Challenge are focused on Knovel’s interactive and comprehensive Unit Converter. In working on projects, engineers commonly convert property data from a specified unit to a required unit (i.e., mass: from lbs to metric tons). With 864 unit types for 82 properties, Knovel’s Unit Converter quickly converts anything from Acceleration, Stress & Pressure to Volume.

To take this week’s Challenge, go to: http://www.knoveluniversitychallenge.com – and master this engineering tool – http://www.knovel.com/web/portal/knovel_tools/tool/unit_converter

Note: If you are connecting from off-campus, go instead to: http://libweb.lib.buffalo.edu/pdp/index.asp?ID=240; from here, click on the name of the database: “Knovel E-Books: Science and Engineering.” When prompted to do so, enter your UBIT name and password. Once connected, click on the University Challenge banner at the top of the screen. Also, if coming in from off-campus, if you usually run VPN (UB’s virtual proxy network software), be sure to turn it OFF as it interferes with authenticating/accessing library-subscription databases like Knovel.

2012 Knovel University Challenge

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2012 Knovel University Challenge: More Questions, More Prizes!

The Challenge Has Begun!

Dates of the Contest: September 10 – December 1, 2012

Every year, the Knovel University Challenge allows students to compete for prizes while learning how to use Knovel, an engineering database and research tool that the UB Libraries subscribe to in order to make available the full-text of over 1,000 engineering handbooks that can help you with your homework and research.

Last year, students from more than 600 universities worldwide submitted more than 12,000 entries and a UB ENGINEERING STUDENT WAS THE GRAND PRIZE WINNER, taking home an iPad. We also had another UB engineering student win one of the contest-within-a-contest prizes. Let’s win again this year!

AND, this year there are even more opportunities to win, with new questions EVERY WEEK, and weekly prizes awarded as well. See below for the details.

What’s New: For the first time ever, there will be new questions and new winners EVERY WEEK, so there are even more opportunities for students to play and win great prizes, like Beats Audio earphones valued at $150 each and more. Knovel will also continue to award a randomly selected grand prize winner and the contest within the contest to schools with the highest number of participating students.

Who Should Play: The challenge is open to current engineering and science students. The only requirement is that you must use Knovel to answer the questions.

How to Play: Go to: http://www.knoveluniversitychallenge.com and click on the PLAY NOW button.

Note: There should be no need to log in to Knovel if you are on campus. If you are trying to access Knovel from off-campus, you should go instead to: http://libweb.lib.buffalo.edu/pdp/index.asp?ID=240 and from this page click on the name of the database: Knovel E-Books: Science and Engineering. It will ask you to authenticate with your UBIT name and password and then pass you in. Once connected, click on the University Challenge banner at the top of the screen. Also, if coming in from off-campus, if you usually run VPN (UB’s virtual proxy network software), turn it off. It interferes with authenticating/accessing library-subscription databases like Knovel.

Let the Games begin!

Web of Science/Knowledge: Left-hand truncation now available

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Hopefully, you know that most databases permit right-hand truncation or word stemming using a special character, usually an asterisk or question mark. For example, in Web of Science, searching for ‘biodegrad*’ would retrieve references with biodegrade, biodegradation, biodegraded, etc. Truncating words is perhaps the simplest way to ensure more complete retrieval of relevant records.

However, very few large databases permit left-hand truncation as well which allows retrieval of word roots with varying prefixes.  As of late this summer, this is now possible in the Web of Knowledge and Web of Science. It can be used alone or with right-hand truncation.

The query ‘*degrad*‘ now retrieves degradation, photodegradated, biodegrade, etc.  Left-hand truncation might not be something you need every day, but it cam be a powerful tool in creating more comprehensive searches. We are not aware of another current, major interdisciplinary database or platform that has a left-hand truncation feature.

Database Comparison: GeoRef and GEOBASE

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The similarly titled GeoRef and GEOBASE databases are among the best and most popular resources for their respective subject areas.  But don’t be fooled by the names – there are a number of differences between the two, which cover much more than geology alone.

Here is a quick comparison between the two:

GeoRef

Established in 1966, GeoRef is produced by the American Geosciences Institute and is now one of the most comprehensive databases for the geosciences (or earth science, as it is sometimes known).  Some specific topics covered include:

  • Environmental and engineering geology
  • Hydrology
  • Economic geology
  • Geophysics
  • Petrology
  • Paleontology
  • Marine geology and oceanography
  • Mineralogy.

This focus lends itself well to use by those studying geology, engineering, environmental sciences, archeology, and similar disciplines.  Students can search a number of different formats, like journal articles, books, maps, conference papers, and reports in order to find information dating back to 1785.

 GEOBASE

There is a degree of overlap between the two databases, however GEOBASE covers a broader range of topics which may be useful to students studying geography, history, international development, ecology biology, and other disciplines.  A brief list of the topics covered is as follows:

  • Geology: Including Mineralogy, Geochemistry, Stratigraphy, Palaeontology, Geophysics, Environmental Geology, Economic Geology and Energy Sources
  • Geomechanics: Including Rock and Soil Mechanics, Hydrogeology, Dams and tunnels, Earthquake Engineering, Site Investigation, Risk analysis, and Waste disposal
  • Oceanography: Including Marine Geology, Marine Meteorology, Biological Oceanography, Chemical Oceanography, Pollution and Environment
  • Physical Geography: Including Meteorology and climatology, GIS, Mapping, Hydrology, Soil science, Global Change, Environmental Pollution, and Geomorphology
  • Human Geography and International Development: Including Environmental resources, Demography, Culture, Politics, Rural and Urban studies, National, Regional and Community Planning, Environmental Planning, Trade and Development, Agriculture, Industry, Transport, Tourism, Historical Geography
  • Ecology: Including Terrestrial Ecology, Aquatic Ecology (Marine, Estuarine and Freshwater), Microbial Ecology, Conservation, Applied Ecology (including Agriculture, Fisheries, Forestry, Pests/Diseases and Pollution), Evolution and Palaeoecology

In addition to journal articles, books, conference papers, and reports dating back to 1973, GEOBASE covers a significant amount of international and non-English language material as well.  Other types of publications indexed in this database are magazine articles, product reviews, directories and all related materials.

Using the Databases

Using both databases is relatively simple, as both utilize the same interface.  Just be sure to check the box corresponding to the appropriate database at the top of the page.  Once a database (or both) is chosen, users can search by title, author, subject, abstract, or even country of origin.

Here are some additional tips for searching:

  • Use truncation (*) to search for words that begin with the same letters.
    - For example: searching comput* returns computer, computers, computerize, computerization
  • Truncation can also be used to replace any number of characters internally.
    - For example: sul*ate returns sulphate or sulfate
  • Use wildcard (?) to replace a single character.
    - For example: wom?n retrieves woman or women
  • Terms are automatically stemmed, except in the author field, unless the “Autostemming off” feature is checked.
    - For example: management returns manage, managed, manager, managers, managing, management

 

 

Database Snapshot: Applied Science & Technology Index

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Applied Science & Technology Index (ASTI) is a multi-disciplinary database covering over 800 periodicals, half of which are peer reviewed.  Included are trade and industrial publications, journals issued by professional and technical societies, specialized subject periodicals, as well as special issues such as buyers’ guides, directories, and conference proceedings.  The disciplines listed below indicated the broad range of topics covered by ASTI.

  • Acoustics
  • Aeronautics
  • Applied Mathematics
  • Artificial Intelligence
  • Chemical Engineering
  • Civil Engineering
  • Communication & Information Technology
  • Engineering & Biomedical Materials
  • Energy Resources & Research
  • Environmental Engineering
  • Geology
  • Industrial Engineering
  • Marine Technology
  • Mechanical Engineering
  • Mining Engineering
  • Neural Networks
  • Nuclear Engineering
  • Oceanography
  • Optical & Neural Computing
  • Petroleum & GasPhysicsRobotics
  • Space Science
  • Textile Industry & Fabrics
Many of the subjects provided offer links to full-text as well.

 Tips for Using Applied Science & Technology Index

  • Choose multiple categories from the “Select a Field” menus in order to limit your searches.
  • Use the “Thesaurus” link at the top of the page to find the appropriate search terms.
    - For example: if you enter “Math” in the Thesaurus, it will tell you to use “Mathematics” for better results.
  • Use an asterisk (*) to ‘truncate’ search terms.
    - For example: searching “wom*n” will provide search results for both “woman” and “women.”

Database Snapshot: Energy & Power Source

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Energy & Power Source is a partial full-text database designed to support the informational needs of the energy and power industries at all levels.  It offers indexing from nearly 5,100 publications, including journals, monographs, magazines, and trade publications, all directly dealing with energy industry-related issues.  Current topics include: Coal, natural gas, petroleum, electric and nuclear power, as well as renewable energy.

This collection covers many areas integral to the energy and power industries, including:

  • Coal
  • Nuclear Power
  • Electric Power
  • Petroleum
  • Natural Gas
  • Renewable Energy

Users will be pleased to find a wide range of information designed to serve energy industry professionals as well.  Energy & Power Source provides information pertaining to both technical and business aspects of the energy industry.


Tips for Using Energy & Power Source

  • Choose multiple categories from the “Select a Field” menus in order to limit your searches.
  • Use the “Thesaurus” link at the top of the page to find the appropriate search terms.
    - For example: if you enter “Atomic Energy” in the Thesaurus, it will tell you to use “Nuclear Energy” for better results.
  • Use an asterisk (*) to ‘truncate’ search terms.
    - For example: searching “wom*n” will provide search results for both “woman” and “women.”

 

 

What’s New in Web of Knowledge

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Earlier this month, Web of Knowledge began rolling out a series of new features and updates designed to give users a clearer and more complete view of scholarly material.  These changes provide greater context and searchability, which developers hope will allow users to retrieve articles and citations with more efficiency and accuracy.

In terms of improving search capabilities, Web of Knowledge claims to now display more complete bibliographic descriptions, which include added context and data, in addition to adding more comprehensive information to it’s Cited Reference Lookup Table.  The UK/US synonym dictionary has been expanded as well in order to pool results with more consistency.  All together, these features create a more accurate and comprehensive picture of a work’s citation information.

At the user level, developers have also added a number of interesting functions to make searches more flexible and organizing  retrieved works easier than ever.  Users can now:

  • Mark and export cited references from an article’s bibliography
  • Search for a cited article or title
  • Display all known authors (and their positions) listed in a bibliography
  • Truncate values in the Topic, Title, UID, and ID codes fields

In all, these changes should continue to make life easier for those who use Web of Knowledge to any large degree, and are likely to precede future updates and innovations as databases become increasingly user-centric.

Web of Knowledge is a collection of multi-disciplinary databases containing leads to citations with bibliographical references for articles from over 8,000 journals.  Many of the references include author-prepared abstracts, as well as links to the full-text of articles (when available).